Publications

Since 2010

 

Yaichi Kawakatsu, Tomoaki Sakamoto, Hokuto Nakayama, Kaori Kaminoyama, Kaori Igarashi, Masaki Yasugi, Hiroshi Kudoh, Atsushi J. Nagano, Kentaro Yano, Nakao Kubo, Michitaka Notaguchi, Seisuke Kimura

Combination of genetic analysis and ancient literature survey reveals the divergence of traditional Brassica rapa varieties from Kyoto, Japan

Horticulture Research (2021) 8:132-1-10 | https://doi.org/10.1038/s41438-021-00569-0

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Ayaka Shimoki, Satoru Tsugawa, Keiichiro Ohashi, Masahito Toda, Akiteru Maeno, Tomoaki Sakamoto, Seisuke Kimura, Takashi Nobusawa, Mika Nagao, Eiji Nitasaka, Taku Demura, Kiyotaka Okada, Seiji Takeda

Reduction in organ–organ friction is critical for corolla elongation in morning glory

Communications Biology (2021) 4: 285-1-8 | https://doi.org/10.1038/s42003-021-01814-x

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多様な視点からトランスサイエンスについて考えるサイエンスイベントの設計と実践：「どちらにしようかな？：未来のお肉から考えるトランスサイエンス」の事例報告

木村成介、渡邉拓巳、小名木陽子、高橋さおり、種村剛

科学技術コミュニケーション（2020）28:11-27 | https://doi: 10.14943/95873 

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坂本智昭、木村成介

Rorippa aquatica染色体レベルゲノムアセンブリデータベースの構築

紀要論文

査読なし

京都産業大学総合学術研究所報（2020）15: 1-10

 

木村成介、金子貴一、本橋健、河邊昭

生態進化発生学研究センター活動報告

研究活動報告

査読なし

京都産業大学総合学術研究所報（2020）15: 217-232

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Rumi Amano, Risa Momoi, Emi Omata, Taiga Nakahara, Kaori Kaminoyama, Mikiko Kojima, Yumiko Takebayashi, Shuka Ikematsu, Yuki Okegawa, Tomoaki Sakamoto, Hiroyuki Kasahara, Hitoshi Sakakibara, Ken Motohashi, Seisuke Kimura

Molecular and biochemical differences in leaf explants and the implication for regeneration ability in Rorippa aquatica(Brassicaceae)

Plants (2020) 9: 1371-1-15 | https://doi:10.3390/plants9101372

 

天野瑠美、木村成介

「切っても切っても生えてくる」- 葉の断片から再生する植物を用いて栄養繁殖の仕組みを解明

自動車技術「超の世界」(2020) 74:110-111

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木村成介

植物における生態進化発生学研究拠点の形成 -統合オミックス解析による展開- 

平成27年度〜平成31年度 私立大学戦略的研究基盤形成支援事業 研究成果報告書

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Kaoru Okamoto Yoshiyama, Naoki Aoshima, Naoki Takahashi, Tomoaki Sakamoto, Kei Hiruma, Yusuke Saijo, Jun Hidema, Masaaki Umeda, Seisuke Kimura

SUPPRESSOR OF GAMMA RESPONSE1 acts as a regulator coordinating crosstalk between DNA damage response and immune response

Plant Molecular Biology (2020) published on line | https://doi.org/10.1007/s11103-020-00994-0

 

Takashi Ishida, Reira Suzuki, Satoru Nakagami, Takeshi Kuroha, Shingo Sakamoto, Miyuki T. Nakata, Ryusuke Yokoyama, Seisuke Kimura, Nobutaka Mitsuda, Kazuhiko Nishitani, Shinichiro Sawa

Root-knot nematodes modulate cell walls during root-knot formation in Arabidopsis roots

Journal of Plant Research (2020) published on line | https://doi.org/10.1007/s10265-020-01186-z

 

Gaojie Li, Shiqi Hu, Jingjing Yang, Xuyao Zhao, Seisuke Kimura, Elizabeth A. Schultz, Hongwei Hou

Establishment of an Agrobacterium mediated transformation protocol for the detection of cytokinin in the heterophyllous plant Hygrophila difformis (Acanthaceae)

Plant Cell Reports (2020) published on line | https://doi.org/10.1007/s00299-020-02527-x

 

Tomoko Hirano, Seisuke Kimura, Tomoaki Sakamoto, Ayaka Okamoto, Takumi Nakayama, Takakazu Matsuura, Yoko Ikeda, Seiji Takeda, Yoshihito Suzuki, Issei Ohshima, Masa H. Sato

Reprograming of the developmental program of Rhus javanica during initial stage of gall induction by Schlechtendalia chinensis 

Frontiers in Plant Science (2020) 11: 471-1-13 | https://doi.org/10.3389/fpls.2020.00471

 

Masaya Yamamoto, Shuhei Uji, Tomoyuki Sugiyama, Tomoaki Sakamoto, Seisuke Kimura, Toshiya Endo and Shuh-ichi Nishikawa 

ERdj3B-mediated quality control maintains anther development at high temperatures

Plant Physiology (2020) 182: 1979-1990| https://doi.org/10.1104/pp.19.01356

 

木村成介、中沢正江、増永滋生、穂崎良典、山岸博

総合生命科学部における理工系コーオプ教育プログラムの実践

高等教育フォーラム（2020）10: 65-74

 

沖野舜、戸部晃久、中本敦也、山田祐太郎、川上雅弘、木村成介

サイエンスコミュニケーション研究会サングラスの設立と活動

高等教育フォーラム (2020) 10: 75-81

 

中沢正江、木村成介

理工系研究室における卒業研究活動にかかる学習効果測定の試み

高等教育フォーラム (2020) 10: 83-87

 

Shigeru Hanamata, Jumpei Sawada, Seijiro Ono, Kazunori Ogawa, Togo Fukunaga, Ken-Ichi Nonomura, Seisuke Kimura, Takamitsu Kurusu, Kazuyuki Kuchitsu

Impact of autophagy on gene expression and tapetal programmed cell death during pollen development in rice

Frontiers in Plant Science (2020) 11: 172-1-19 | https://doi.org/10.3389/fpls.2020.00172

 

Rumi Amano, Hokuto Nakayama, Risa Momoi, Emi Omata, Shizuka Gunji, Yumiko Takebayashi, Mikiko Kojima, Shuka Ikematsu, Momoko Ikeuchi, Akira Iwase, Tomoaki Sakamoto, Hiroyuki Kasahara, Hitoshi Sakakibara, Ali Ferjani and Seisuke Kimura

Molecular Basis for Natural Vegetative Propagation via Regeneration in North American Lake Cress, Rorippa aquatica(Brassicaceae)

Plant and Cell Physiology (2020) 61: 353-369 | https://doi.org/10.1093/pcp/pcz202

 

Gholamreza Gohari, Asghar Mohammadi, Ali Akbari, Sima Panahirad, Mohammad Reza Dadpour, Vasileios Fotopoulos and Seisuke Kimura

Titanium dioxide nanoparticles (TiO2 NPs) promote growth and ameliorate salinity stress effects on essential oil profile and biochemical attributes of Dracocephalum moldavica

Scientific Reports (2020) 10: 912-1-14 | https://doi.org/10.1038/s41598-020-57794-1

 

佐藤賢一、木村成介、平野貴美枝（制作）

ハテナソン国際フォーラム2019開催レポート（電子ジャーナル）

NPO法人ハテナソン共創ラボ (2019)

 

Seiji Takeda, Makiko Yoza, Taisuke Amano, Issei Ohshima, Tomoko Hirano, Masa H. Sato, Tomoaki Sakamoto, Seisuke Kimura

Comparative transcriptome analysis of galls from four different host plants suggests the molecular mechanism of gall development

PLOS ONE (2019) 14: e0223686-1-19 | https://doi.org/10.1371/journal.pone.0223686

 

Gaojie Li, Shiqi Hu, Hongwei Hou and Seisuke Kimura

Heterophylly: Phenotypic Plasticity of Leaf Shape in Aquatic and Amphibious Plants 

Review

Plants (2019) 8: 420-1-13 | https://doi.org/10.3390/plants8100420

 

郡司玄、天野瑠美、金子真也、Ferjani Ali、木村成介

アブラナ科植物Rorippa aquaticaの再生能力に注目した栄養生殖の教材化と授業実践

生物教育 (2019) 60: 137-147 (Issue cover)

 

木村成介、金子貴一、本橋健、河邊昭

生態進化発生学研究センター活動報告

研究活動報告

査読なし

京都産業大学総合学術研究所報（2019）14: 187-198

 

Mai Tsujimura, Takakazu Kaneko, Tomoaki Sakamoto, Seisuke Kimura, Masayoshi Shigyo, Hiroshi Yamagishi, Toru Terachi

Multichromosomal structure of the onion mitochondrial genome and a transcript analysis

Mitochondrion (2019) 46: 179-186 | https://doi.org/10.1016/j.mito.2018.05.001

 

木村成介、山本大地

平成29年度「海外サイエンスキャンプ」の成果と課題

高等教育フォーラム (2019) 9: 51-58

 

Saori Miyoshi, Seisuke Kimura, Ryo Ootsuki, Takumi Higaki, Akiko Nakamasu

Developmental analyses of divarications in leaves of an aquatic fern Microsorum pteropus and its varieties 

PLOS ONE (2019) 14: e0210141 | https://doi.org/10.1371/journal.pone.0210141

 

池松朱夏、木村成介

葉の形から迫る植物の温度感知メカニズム

総説

査読なし

アグリバイオ 研究者の広場 (2019) 3: 48-51

 

Tomoaki Sakamoto, Seisuke Kimura

Plant Temperature Sensors

Review

sensors (2018) 18: 4365 | https://doi.org/10.3390/s18124365

 

木村成介、金子貴一、本橋健、河邊昭

生態進化発生学研究センター活動報告

研究活動報告

査読なし

京都産業大学総合学術研究所報（2018）13: 121-135

 

Kaoru Okamoto Yoshiyama, Seisuke Kimura

Ser-Gln sites of SOG1 are rapidly hyperphosphorylated in response to DNA double-strand breaks

Plant Signaling and Behavior (2018) 13: e1477904 | https://doi.org/10.1080/15592324.2018.1477904

 

木村成介、佐藤賢一、千葉志信、村田英雄

高大連携授業におけるハテナソンの実践 – 「問われる立場」から「問う立場」への転換を目指して–

高等教育フォーラム (2018) 8: 21-39

 

氷見栄成、木村成介

ハテナソンにより高校理科授業における主体的・対話的で深い学びを促す　– 生物基礎・地学基礎の授業実践から –

京都産業大学教職研究紀要 (2018) 13: 1-32

 

吉井優太郎、木村成介

小学校におけるハテナソンの実践　– 主体的・対話的で深い学びを実現するための手法として –

京都産業大学教職研究紀要 (2018) 13: 33-46

 

Hokuto Nakayama, Tomoaki Sakamoto, Yuki Okegawa, Kaori Kaminoyama, Manabu Fujie, Yasunori Ichihashi, Tetsuya Kurata, Ken Motohashi, Ihsan Al-Shehbaz, Neelima Sinha, Seisuke Kimura

Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions in North American Lake cress

Scientific Reports (2018) 8: 3302 | https://doi.org/10.1038/s41598-018-21646-w

 

Naoyuki Uchida, Koji Takahashi, Rie Iwasaki, Ryotaro Yamada, Masahiko Yoshimura, Takaho A. Endo, Seisuke Kimura, Hua Zhang, Mika Nomoto, Yasuomi Tada, Toshinori Kinoshita, Kenichiro Itami, Shinya Hagihara, Keiko U. Tori

Chemical hijacking of auxin signaling with an engineered auxin-TIR1 pair

Nature Chemical Biology (2018) 14: 299-305 | https://doi.org/10.1038/nchembio.2555

 

Kaoru Okamoto Yoshiyama, Kaori Kaminoyama, Tomoaki Sakamoto, Seisuke Kimura

Increased phosphorylation of Ser-Gln sites on SUPPRESSOR OF GAMMA RESPONSE1 strengthens the DNA damage response in Arabidopsis thaliana

The Plant Cell (2017) 29: 3255-3268 | https://doi.org/10.1105/tpc.17.00267

 

Akiko Nakamasu, Nobuhiko J. Suematsu, Seisuke Kimura

Asymmetries in leaf branch are associated with differential speeds along growth axes: A theoretical prediction

Developmental Dynamics (2017) 246: 981-991 | https://doi.org/10.1002/DVDY.24587

 

Hokuto Nakayama, Neelima Sinha, Seisuke Kimura

How Do Plants and Phytohormones Accomplish Heterophylly, Leaf Phenotypic Plasticity, in Response to Environmental Cues

Review

Frontiers in Plant Science (2017) 8: 1717 | https://doi.org/10.3389/fpls.2017.01717

 

木村成介、金子貴一、本橋健、河邊昭

生態進化発生学研究センター活動報告

研究活動報告

査読なし

京都産業大学総合学術研究所報（2017）12: 129-142

 

木村成介、佐藤賢一

自ら問い、自ら考えるハテナソンによる実験授業の活性化と学びの深化

京都産業大学教職研究紀要 (2017) 12: 43-86

 

Yaichi Kawakatsu, Hokuto Nakayama, Kaori Kaminoyama, Kaori Igarashi, Masaki Yasugi, Hiroshi Kudoh, Atsushi J. Nagano, Kentaro Yano, Nakao Kubo, Seisuke Kimura

A GLABRA1 ortholog on LG A9 controls trichome number in the Japanese leafy vegetables Mizuna and Mibuna (Brassica rapa subsp. Nipposinica L. H. Bailey): evidence from QTL analysis

Journal of Plant Research (2017) 130: 539-550 | https://doi.org/10.1007/s10265-017-0917-5

 

木村成介、金子貴一、本橋健、河邊昭

生態進化発生学研究センター活動報告

研究活動報告

査読なし

京都産業大学総合学術研究所報（2016）11: 179-193

 

坂本智昭、木村成介

Rorippa aquatica遺伝子情報データベースの構築

紀要論文

査読なし

京都産業大学総合学術研究所報（2016）11: 105-113

 

天野瑠美、中山北斗、木村成介

アブラナ科植物Rorippa aquaticaにみられる葉断面からの栄養繁殖条件の検討

紀要論文

査読なし

京都産業大学総合学術研究所報（2016）11: 115-121

 

中西佳世子、中沢正江、木村成介、山本尚広、荻野晃大、下田幸男、平春菜

主体性と異文化受容力を育成する正課外プロジェクト型教育の実践と評価 – WACE世界大会の学生企画活動の事例より-

高等教育フォーラム（2016）6: 49-63

 

木村成介、川勝弥一

水菜と壬生菜の来歴について –文献と遺伝子から探る葉形変化の歴史–

京都産業大学論集人文科学系列（2016）49: 161-181

 

Hokuto Nakayama and Seisuke Kimura

Leaves may function as temperature sensors in the heterophylly of Rorippa aquatica (Brassicaceae)

Plant Signaling and Behavior (2015) 10: e1091909 | https://doi.org/10.1080/15592324.2015.1091909

 

Rumi Amano, Hokuto Nakayama, Yurika Morohoshi, Yaichi Kawakatsu, Ali Ferjani, and Seisuke Kimura

A Decrease in ambient temperature induces post-mitotic enlargement of palisade cells in North American Lake-Cress

PLOS ONE (2015) 10: e0141247 | https://doi.org/10.1371/journal.pone.0141247

Hokuto Nakayama, Kensuke Kawade, Hirokazu Tsukaya, and Seisuke Kimura

Detection of the cell proliferation zone in leaves by using EdU

Bio-protocol (2015) 5: e1600 | https://doi.org/10.21769/BioProtoc.1600

 

José Antonio Aguilar-Martinez, Naoyuki Uchida, Brad Townsley, Donnelly Ann West, Andrea Yanez, Nafeesa Lynn, Seisuke Kimura, Neelima Sinha

Transcriptional, post-transcriptional and post-translational regulation of SHOOT MERISTEMLESS gene expression in Arabidopsis determines gene function in shoot apex

Plant Physiology (2015) 167: 424-442 | https://doi.org/10.1104/pp.114.248625

 

Hokuto Nakayama, Naomi Nakayama, Sumer Seiki, Mikiko Kojima, Hitoshi Sakakibara, Neelima Sinha, Seisuke Kimura

Regulation of the KNOX-GA gene module induces heterophyllic alternation in North American lake cress

The Plant Cell (2014) 26: 4733-4748 | https://doi.org/10.1105/tpc.114.130229 (Issue cover)

 

Akiko Nakamasu, Hokuto Nakayama, Naomi Nakayama, Nobuhiko J. Suematsu, Seisuke Kimura

A developmental model for branching morphogenesis of lake cress compound leaf

PLOS ONE (2014) 9: e111615 | https://doi.org/10.1371/journal.pone.0111615

 

Anthony Bolger, Federico Scossa, Marie E. Bolger, Christa Lanz, Florian Maumus, Takayuki Tohge, Hadi Quesneville, Saleh Alseekh, Iben Sørensen, Gabriel Lichenstein, Eric A. Fich, Mariana Conte, Heike Keller, Korbinian Schneeberger, Rainer Schwacke, Itai Ofner, Julia Vrebalov, Yimin Xu, Sonia Osorio, Saulo Alves Aflitos, Elio Schijlen, Josè M. Jiminèz-Gomèz, Malgorzata Ryngajllo, Seisuke Kimura, Ravi Kumar, Daniel Koenig, Lauren R. Headland, Julin N. Maloof, Neelima Sinha, Roeland C. H. J. van Ham, Renè Klein Lankhorst, Linyong Mao, Alexander Vogel, Borjana Arsova, Ralph Panstruga, Zhangjun Fei, Jocelyn K. C. Rose, Dani Zamir, Fernando Carrari, James J. Giovannoni, Detlef Weigel, Björn Usadel, Alisdair R. Fernie

The genome of the stress tolerant wild tomato species Solanum pennellii

Nature Genetics (2014) 46: 1034-1028 | https://doi.org/10.1038/ng.3046

 

稲垣麻美、内山幸伸、金井良博、坂口謙吾、木村成介

植物のTWINKLEは葉緑体DNA複製に関わるDNAプライマーゼか？ – 細胞内局在の検討 –

紀要論文

査読なし

京都産業大学総合学術研究所報（2014）9: 87-94

 

Kaoru O Yoshiyama, Seisuke Kimura, Hisaji Maki, Anne B. Britt, Masaaki Umeda

The role of SOG1, a plant-specific transcriptional regulator, in the DNA damage response

Review

Plant Signaling & Behavior (2014) 9: e28889 | https://doi.org/10.4161/psb.28889

 

Hokuto Nakayama, Kenji Fukushima, Tatsuya Fukuda, Jun Yokoyama, Seisuke Kimura

Molecular Phylogeny Determined Using Chloroplast DNA Inferred a New Phylogenetic Relationship of Rorippa aquatica (Eaton) EJ Palmer & Steyermark (Brassicaceae) - Lake Cress

American Journal of Plant Sciences (2014) 5: 48-54 | https://doi.org/10.4236/ajps.2014.51008

 

Kaoru O Yoshiyama, Kengo Sakaguchi, Seisuke Kimura

DNA damage response in plants: Conserved and variable response compared to animals

Review in special issue on “Insights from Plant Genomes”

Biology (2013) 2: 1338-1356 | https://doi.org/10.3390/biology2041338

 

Kaoru O Yoshiyama, Junya Kobayashi, Nobuo Ogita, Minako Ueda, Seisuke Kimura, Hisaji Maki, Masaaki Umeda

ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis

EMBO Reports (2013) 14: 817-822 | https://doi.org/10.1038/embor.2013.112

 

武内亮、中山北斗、金井良博、内山幸伸、坂口謙吾、木村成介

植物のTWINKLEは葉緑体DNA複製に関わるDNAプライマーゼか？ – アミノ酸配列の比較による検討 –

紀要論文

査読なし

京都産業大学総合学術研究所報（2013）8：49-55　

 

Daniel Koenig*, José M. Jiménez-Gómez*, Seisuke Kimura§, Daniel Fulop§, Daniel H. Chitwood, Lauren R. Headland, Ravi Kumar, Michael F. Covington, Upendra Kumar Devisetty, An V. Tat, Takayuki Tohge, Anthony Bolger, Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, Guangyan Xiong, Mallorie Taylor-Teeples, Siobhan M Brady, Markus Pauly, Detlef Weigel, Björn Usadel, Alisdair R. Fernie, Jie Peng, Neelima R. Sinha, and Julin N. Maloof (*§ These authors contributed equally to this work)

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

Proc. Natl. Acad. Sci. USA (2013) 110: E2655-2662 | https://doi.org/10.1073/pnas.1309606110

 

Molly Sharlach, Douglas Dahlbeck, Lily Liu, Joshua Chiu, José M. Jiménez-Gómez, Seisuke Kimura, Daniel Koenig, Julin N. Maloof, Neelima Sinha, Gerald V. Minsavage, Jeffrey B. Jones, Robert E. Stall, Brian J. Staskawicz

Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716

Theoretical and Applied Genetics (2013) 126: 601-609 | https://doi.org/10.1007/s00122-012-2004-6

 

木村 成介

複葉の発生と進化

総説

生物の科学　遺伝 (2013) 67: 50-56

 

Ravi Kumar, Yasunori Ichihasi, Seisuke Kimura, Daniel H. Chitwood, Lauren R. Headland, Jie Peng, Julin N. Maloof, Neelima R. Sinha

A high-throughput method for Illumina RNA-seq library preparation

Frontiers in Plant Genetics and Genomics (2012) 3: 1-10 | https://doi.org/10.3389/fpls.2012.00202

 

Amos Alakonya*, Ravi Kumar*, Daniel Koenig*, Seisuke Kimura*, Brad Townsley*, Steven Runo, Helena M Garces, Julie Kang, Andrea Yanez, Rakafet David-Schwartz, Jesse Machuka, and Neelima Sinha (*These authors contributed equally to this work)

Interspecific RNAi of STM disrupts Cuscuta pentagona plant parasitism

The Plant Cell (2012) 24: 3153-3166 | https://doi.org/10.1105/tpc.112.099994

 

Naomi Nakayama, Richard Smith, Therese Mandel, Sarah Robinson, Seisuke Kimura, Arezki Boudaoud, Cris Kuhlemeier

Mechanical regulation of auxin-mediated growth

Current Biology (2012) 22: 1468-1476 | https://doi.org/10.1016/j.cub.2012.06.050

 

Hokuto Nakayama, Naomi Nakayama, Akiko Nakamasu, Neelima Sinha and Seisuke Kimura

Toward elucidating the mechanisms that regulate heterophylly

Review

Plant Morphology (2012) 24: 57-63

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